page_id: architecture page_type: architecture generation_mode: inferred freshness_status: updated updated_at: 2026-07-06T01:46:12.512Z
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}
Architecture
High-level architecture for Helix.
Related Pages
Architecture Summary
Primary project kind: Data Pipeline (67% confidence). Secondary project kinds: Infrastructure, Api Service, Cli Tool, Library, Executable Application.
Classification evidence:
- Infrastructure (+8): Infrastructure, deployment, Terraform, Helm, Kustomize, or Compose files are present.
deploy/aws_t4/main.tf,deploy/aws_t4/user_data.sh,deploy/docker-compose.image.yml,deploy/docker-compose.yml,deploy/Dockerfile.teams,deploy/helm/helix-teams/Chart.yaml,deploy/helm/helix-teams/README.md,deploy/helm/helix-teams/templates/_helpers.tpl - Data Pipeline (+8): Data pipeline, orchestration, notebook, dbt, or DVC surfaces are present.
docs/notebooks/edit_dag_visual_demo.ipynb,notebooks/triage_dashboard.ipynb - Api Service (+7): API framework dependencies, API interfaces, or service runtime surfaces are present.
examples/offscreen_webrtc_demo/signaling/package.json,pyproject.toml,requirements-dev.txt,tools/hubverifier-go/cmd/hubverify/main.go,tools/hubverifier-go/internal/c14n/c14n_test.go,tools/hubverifier-go/internal/c14n/c14n.go,tools/hubverifier-go/internal/hubverify/hubverify.go - Cli Tool (+7): CLI declarations, interfaces, or command-oriented workflows are present.
examples/offscreen_webrtc_demo/signaling/package.json,pyproject.toml - Library (+7): Package distribution metadata or library-oriented manifests are present.
examples/offscreen_webrtc_demo/signaling/package.json,pyproject.toml - Runtime (+6): Runtime entrypoints or start/dev/serve workflows are present.
helix,helix-campaign,helix-cli,helix-pilot-verify,helix-studio,omnis-helix,pyproject.toml
Detected ecosystems:
- go
- node
- python
Top-level directories:
.bench/.githooks/.github/.helix/.playwright-mcp/.repointel/.smoke_systems/VeriBiota/Visualization_Bench/baselines/benchmarks/calibration/deliver_workbench/deploy/design_partner/docs/engine/examples/experiments/fixtures/helix/helix_gui/helixtasks/keys/live_runs/notebooks/out/outreach/packaging/policies/python/repro/schemas/scripts/shaders/src/state/stdlib/templates/tests/tools/veribiota_work/viz_transforms/workflows/
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How This Actually Works
Insufficient evidence to narrate one concrete implementation path through this repository.
<details> <summary>Supporting citations:</summary>- none
Key Abstractions
apply_layout_preset core implementation module
What it is: apply_layout_preset core implementation module acts as an inferred core implementation module built around apply_layout_preset, center_tabs in src/helix/studio/main_window.py.
What it controls: Controls a visible slice of src behavior instead of acting as passive inventory.
If you change it: Changing apply_layout_preset core implementation module can shift a central behavior boundary rather than only renaming an internal helper.
src/helix/studio/main_window.py:592src/helix/studio/main_window.py:639
addItem core implementation module
What it is: addItem core implementation module acts as an inferred core implementation module built around addItem, addWidget in src/helix/studio/outcome_explorer.py.
What it controls: Controls a visible slice of src behavior instead of acting as passive inventory.
If you change it: Changing additem core implementation module can shift a central behavior boundary rather than only renaming an internal helper.
src/helix/studio/outcome_explorer.py:1822src/helix/studio/outcome_explorer.py:1862
CLI entry surface
What it is: CLI entry surface acts as an inferred public orchestration module built around cli_main, CliCompletionFooter in src/helix/cli.py.
What it controls: Controls operator entry into RepoIntel commands and the first handoff into service logic.
If you change it: Changing it can alter operator-facing entry semantics and the first control handoff into RepoIntel internals.
src/helix/cli.py:299src/helix/cli.py:1642
active_edit_context core implementation module
What it is: active_edit_context core implementation module acts as an inferred core implementation module built around active_edit_context, AlleleInspector in src/helix/studio/lightcone_panel.py.
What it controls: Controls a visible slice of src behavior instead of acting as passive inventory.
If you change it: Changing active_edit_context core implementation module can shift a central behavior boundary rather than only renaming an internal helper.
src/helix/studio/lightcone_panel.py:1518src/helix/studio/lightcone_panel.py:2189
add_entry public orchestration module
What it is: add_entry public orchestration module acts as an inferred public orchestration module built around add_entry, add_mode_tab in src/helix/gui/simbuilder/app.py.
What it controls: Controls how src coordinates neighboring implementation units.
If you change it: Changing add_entry public orchestration module can shift a central behavior boundary rather than only renaming an internal helper.
src/helix/gui/simbuilder/app.py:1139src/helix/gui/simbuilder/app.py:115
src/helix/studio/main_window.pysrc/helix/studio/outcome_explorer.pysrc/helix/cli.pysrc/helix/studio/lightcone_panel.pysrc/helix/gui/simbuilder/app.py
src/helix/studio/main_window.py:592src/helix/studio/main_window.py:639src/helix/studio/outcome_explorer.py:1822src/helix/studio/outcome_explorer.py:1862src/helix/cli.py:299src/helix/cli.py:1642src/helix/studio/lightcone_panel.py:1518src/helix/studio/lightcone_panel.py:2189src/helix/gui/simbuilder/app.py:1139src/helix/gui/simbuilder/app.py:115
State Transitions and Recovery
Insufficient evidence to explain one bounded state path and its first recovery boundary confidently.
<details> <summary>Supporting citations:</summary>- none
Subsystem Narratives
Diagram link: Subsystem Clusters.
external
Purpose: external groups 118 components under external/ or related paths.
Responsibilities:
- External node dependency inferred from examples/offscreen_webrtc_demo/signaling/package.json.
- External python dependency inferred from lockfile resolution.
- Grouped around dominant path prefix
external.
Key dependencies:
Boundary notes:
- Mostly operates within its own inferred subsystem boundary.
- No strong adjacent subsystem boundary was inferred.
- Dominant paths:
examples/offscreen_webrtc_demo/signaling/package.json.
root
Purpose: root groups 9 components under root/ or related paths.
Responsibilities:
- Repository documentation and wiki source files.
- helix-governance python component
- Python script entrypoint helix.
- Python script entrypoint helix-campaign.
Key dependencies:
Boundary notes:
- Crosses 15 external dependency edges into related subsystems.
- Most connected to
src,tools. - Dominant paths:
benchmarks/README.md,deliver_workbench/README.md,deploy/helm/helix-teams/README.md,pyproject.toml,src/helix_api.py,src/helix_cuda_fields.py.
src
Purpose: src groups 4 components using path structure plus graph-connected merges.
Responsibilities:
- offscreen-webrtc-signaling node component
- Source module rooted at src.
- Source module rooted at src/helix_engine/src.
- Repository tests and fixtures.
Key dependencies:
- pytest
- numpy
- matplotlib
- cryptography
- jsonschema
Boundary notes:
- Crosses 4115 external dependency edges into related subsystems.
- Most connected to
root,external,tools. - Dominant paths:
examples/offscreen_webrtc_demo/signaling/package.json,examples/offscreen_webrtc_demo/signaling/server.js,src/helix_api.py,src/helix_cuda_fields.py,src/helix_engine/__init__.py,src/helix_engine/src/binding.cpp.
tools
Purpose: tools groups 2 components under tools/ or related paths.
Responsibilities:
- Go command rooted at tools/hubverifier-go/cmd/hubverify.
- github.com/omniscoder/Helix/tools/hubverifier-go go component
- Grouped around dominant path prefix
tools. - Most connected to
srcthrough inferred graph edges.
Key dependencies:
Boundary notes:
- Crosses 1 external dependency edges into related subsystems.
- Most connected to
src. - Dominant paths:
tools/hubverifier-go/cmd/hubverify/main.go,tools/hubverifier-go/go.mod,tools/hubverifier-go/internal/c14n/c14n_test.go.
engine
Purpose: engine groups 1 components under engine/ or related paths.
Responsibilities:
- Source module rooted at engine/src.
- Grouped around dominant path prefix
engine.
Key dependencies:
Boundary notes:
- Mostly operates within its own inferred subsystem boundary.
- No strong adjacent subsystem boundary was inferred.
- Dominant paths:
engine/src/helix/cuda/fields/composite_editability.cu,engine/src/helix/cuda/fields/dcas9_occupancy.cu,engine/src/helix/cuda/fields/gc_homopolymer.cu.
examples/offscreen_webrtc_demo/signaling/package.jsonbenchmarks/README.mddeliver_workbench/README.mddeploy/helm/helix-teams/README.mdpyproject.tomlsrc/helix_api.pysrc/helix_cuda_fields.pyrequirements-dev.txtexamples/offscreen_webrtc_demo/signaling/server.jssrc/helix_engine/__init__.pysrc/helix_engine/src/binding.cppsrc/helix_engine/src/ctmc_tau_leap_cuda.cusrc/helix_engine/src/l0_thermo.cudeliver_workbench/tests/__init__.pydeliver_workbench/tests/test_adapter_e2e.pydeliver_workbench/tests/test_database.pytools/hubverifier-go/cmd/hubverify/main.gotools/hubverifier-go/go.modtools/hubverifier-go/internal/c14n/c14n_test.goengine/src/helix/cuda/fields/composite_editability.cuengine/src/helix/cuda/fields/dcas9_occupancy.cuengine/src/helix/cuda/fields/gc_homopolymer.cu
examples/offscreen_webrtc_demo/signaling/package.jsonbenchmarks/README.mddeliver_workbench/README.mdpyproject.tomlsrc/helix_api.pyrequirements-dev.txtdeploy/helm/helix-teams/README.mdsrc/helix_cuda_fields.pyexamples/offscreen_webrtc_demo/signaling/server.js:6src/helix_engine/src/binding.cppsrc/helix_engine/src/ctmc_tau_leap_cuda.cudeliver_workbench/tests/__init__.pydeliver_workbench/tests/test_adapter_e2e.py:16src/helix_engine/__init__.pytools/hubverifier-go/cmd/hubverify/main.go:22tools/hubverifier-go/go.modtools/hubverifier-go/internal/c14n/c14n_test.go:5engine/src/helix/cuda/fields/composite_editability.cuengine/src/helix/cuda/fields/dcas9_occupancy.cuengine/src/helix/cuda/fields/gc_homopolymer.cu
Execution Narrative
Stages:
- Entry begins with
helix(run) from.. - Initial control lands in offscreen-webrtc-signaling and quickly centers on hubverify as the primary execution owner.
- Triggered by inferred call and dependency edges leaving src.
- src hands off to
Documentation,helix-governancein root through 3571 inferred call and dependency edges.
Owning components:
- offscreen-webrtc-signaling (application)
- hubverify (application)
- helix-governance (application)
- Tests (tests)
- Documentation (docs)
Handoffs:
- src -> root: src groups 4 components using path structure plus graph-connected merges. hands off into root groups 9 components under root/ or related paths.
- src hands off to
Documentation,helix-governancein root through 3571 inferred call and dependency edges.
pyproject.tomlhelixexamples/offscreen_webrtc_demo/signaling/package.jsonexamples/offscreen_webrtc_demo/signaling/server.jstools/hubverifier-go/cmd/hubverify/main.gosrc/helix_api.pysrc/helix_cuda_fields.pybenchmarks/README.md
pyproject.tomlhelixexamples/offscreen_webrtc_demo/signaling/package.jsonexamples/offscreen_webrtc_demo/signaling/server.jstools/hubverifier-go/cmd/hubverify/main.gosrc/helix_api.pysrc/helix_cuda_fields.pydeliver_workbench/tests/__init__.pydeliver_workbench/tests/test_adapter_e2e.pybenchmarks/README.mddeliver_workbench/README.mdsrc/helix_engine/__init__.pysrc/helix_engine/src/binding.cppdeploy/helm/helix-teams/README.md
pyproject.tomlhelixexamples/offscreen_webrtc_demo/signaling/package.jsonexamples/offscreen_webrtc_demo/signaling/server.js:6tools/hubverifier-go/cmd/hubverify/main.go:22src/helix_api.pysrc/helix_cuda_fields.pybenchmarks/README.md
Code Path Slice
Starts at: start (function) in src/helix/studio/terminal/process_backend.py. Chosen because start is an exported trigger inside hotspot component src.
Calls into: _start_pty_process (function) in src/helix/studio/terminal/process_backend.py.
Stops at: set_winsize (function) in src/helix/studio/terminal/process_backend.py, where no deeper unambiguous call step was inferred within the bounded slice.
src/helix/studio/terminal/process_backend.py:48src/helix/studio/terminal/process_backend.py:57src/helix/studio/terminal/process_backend.py:235
src/helix/studio/terminal/process_backend.py
src/helix/studio/terminal/process_backend.py:48src/helix/studio/terminal/process_backend.py:57src/helix/studio/terminal/process_backend.py:235
State and Data Flow
Inputs:
- Input enters from workflow
helix(run) viahelix.
Transformations:
- src acts as the primary transformation owner. It hands off into
Documentation,hubverify,Tests,offscreen-webrtc-signalingfor the next transformation steps. - Downstream transformation continues through
Documentation,hubverify,github.com/omniscoder/Helix/tools/hubverifier-go,Tests.
Storage or sinks:
Documentation,hubverify,github.com/omniscoder/Helix/tools/hubverifier-go,Testsbehave as the final inferred sinks or terminal state holders in this path.
pyproject.tomlhelixsrc/helix_api.pysrc/helix_cuda_fields.pybenchmarks/README.mddeliver_workbench/README.mdtools/hubverifier-go/cmd/hubverify/main.godeliver_workbench/tests/__init__.pydeliver_workbench/tests/test_adapter_e2e.pyexamples/offscreen_webrtc_demo/signaling/package.json
pyproject.tomlhelixsrc/helix_api.pysrc/helix_cuda_fields.pysrc/helix_engine/__init__.pybenchmarks/README.mddeliver_workbench/README.mdtools/hubverifier-go/cmd/hubverify/main.godeliver_workbench/tests/__init__.pydeliver_workbench/tests/test_adapter_e2e.pyexamples/offscreen_webrtc_demo/signaling/package.jsonexamples/offscreen_webrtc_demo/signaling/server.jstools/hubverifier-go/go.modsrc/helix_engine/src/binding.cppdeploy/helm/helix-teams/README.md
pyproject.tomlhelixsrc/helix_api.pysrc/helix_cuda_fields.pybenchmarks/README.mddeliver_workbench/README.mdtools/hubverifier-go/cmd/hubverify/main.go:22deliver_workbench/tests/__init__.pydeliver_workbench/tests/test_adapter_e2e.py:16examples/offscreen_webrtc_demo/signaling/package.json
Subsystem Interactions
Diagram links: Subsystem Clusters and Dependency Graph.
src -> root
Purpose: src groups 4 components using path structure plus graph-connected merges. hands off into root groups 9 components under root/ or related paths.
Trigger: Triggered by inferred call and dependency edges leaving src.
Handoff: src hands off to Documentation, helix-governance in root through 3571 inferred call and dependency edges.
src/helix_api.pysrc/helix_cuda_fields.pybenchmarks/README.mddeliver_workbench/README.mddeliver_workbench/tests/__init__.pydeliver_workbench/tests/test_adapter_e2e.py:16pyproject.toml
src -> external
Purpose: src groups 4 components using path structure plus graph-connected merges. hands off into external groups 118 components under external/ or related paths.
Trigger: Triggered by inferred dependency edges leaving src.
Handoff: src hands off to pytest, numpy, matplotlib in external through 533 inferred dependency edges.
deliver_workbench/tests/__init__.pydeliver_workbench/tests/test_adapter_e2e.py:16src/helix_api.pysrc/helix_cuda_fields.py
src -> tools
Purpose: src groups 4 components using path structure plus graph-connected merges. hands off into tools groups 2 components under tools/ or related paths.
Trigger: Triggered by inferred call edges leaving src.
Handoff: src hands off to hubverify in tools through 11 inferred call edges.
src/helix_api.pysrc/helix_cuda_fields.pytools/hubverifier-go/cmd/hubverify/main.go:22deliver_workbench/tests/__init__.pydeliver_workbench/tests/test_adapter_e2e.py:16
root -> src
Purpose: root groups 9 components under root/ or related paths. hands off into src groups 4 components using path structure plus graph-connected merges.
Trigger: Usually triggered from workflow make (build) touching root.
Handoff: root hands off to src in src through 8 inferred call edges.
benchmarks/README.mddeliver_workbench/README.mdsrc/helix_api.pysrc/helix_cuda_fields.py
src/helix_api.pysrc/helix_cuda_fields.pydeliver_workbench/tests/__init__.pydeliver_workbench/tests/test_adapter_e2e.pybenchmarks/README.mddeliver_workbench/README.mdpyproject.tomlexamples/offscreen_webrtc_demo/signaling/package.jsonexamples/offscreen_webrtc_demo/signaling/server.jssrc/helix_engine/__init__.pysrc/helix_engine/src/binding.cppdeploy/helm/helix-teams/README.mdtools/hubverifier-go/cmd/hubverify/main.gotools/hubverifier-go/go.modtools/hubverifier-go/internal/c14n/c14n_test.go
src/helix_api.pysrc/helix_cuda_fields.pybenchmarks/README.mddeliver_workbench/README.mddeliver_workbench/tests/__init__.pydeliver_workbench/tests/test_adapter_e2e.py:16pyproject.tomltools/hubverifier-go/cmd/hubverify/main.go:22
Invariants and Risks
src is an implicit compatibility boundary
Assumption: Assumption: src can change without breaking external, root, tools is risky, because the component bridges those subsystems and carries hotspot score 93609.
src/helix_api.pysrc/helix_cuda_fields.pysrc/helix_engine/__init__.py
src -> root is a cross-subsystem coupling hazard
Coupling hazard: Coupling hazard: src hands off to Documentation, helix-governance in root through 3571 inferred call and dependency edges. Changes on either side are likely to ripple because src groups 4 components using path structure plus graph-connected merges. hands off into root groups 9 components under root/ or related paths..
src/helix_api.pysrc/helix_cuda_fields.pybenchmarks/README.mddeliver_workbench/README.mddeliver_workbench/tests/__init__.pydeliver_workbench/tests/test_adapter_e2e.py:16pyproject.toml
Operational changes tend to fail first at configuration and validation boundaries
Failure boundary: Failure boundary: verify risk-sensitive settings such as deploy/aws_t4/main.tf, deploy/docker-compose.yml against make and python -m pytest before and after changes, because those surfaces are the first deterministic checks tied to likely breakage.
pyproject.tomlMakefiledeploy/aws_t4/main.tfdeploy/docker-compose.ymlsrc/helix_api.pysrc/helix_cuda_fields.py
src/helix_api.pysrc/helix_cuda_fields.pysrc/helix_engine/__init__.pysrc/helix_engine/CMakeLists.txtdeliver_workbench/tests/__init__.pydeliver_workbench/tests/test_adapter_e2e.pybenchmarks/README.mddeliver_workbench/README.mdpyproject.tomlexamples/offscreen_webrtc_demo/signaling/package.jsonexamples/offscreen_webrtc_demo/signaling/server.jssrc/helix_engine/src/binding.cppdeploy/helm/helix-teams/README.mdMakefiledeploy/aws_t4/main.tfdeploy/docker-compose.yml
src/helix_api.pysrc/helix_cuda_fields.pysrc/helix_engine/__init__.pybenchmarks/README.mddeliver_workbench/README.mddeliver_workbench/tests/__init__.pydeliver_workbench/tests/test_adapter_e2e.py:16pyproject.tomlMakefiledeploy/aws_t4/main.tfdeploy/docker-compose.yml
External Systems
Insufficient evidence to infer external systems confidently.
<details> <summary>Supporting citations:</summary>- none
Subsystems and Components
- Helix (application) depends on 0 known edges.
- helix-governance (application) depends on 0 known edges.
- src (module) depends on 2177 known edges.
- Tests (tests) depends on 1555 known edges.
- Documentation (docs) depends on 0 known edges.
- engine/src (module) depends on 0 known edges.
- github.com/omniscoder/Helix/tools/hubverifier-go (application) depends on 1 known edges.
- src/helix_engine/src (module) depends on 0 known edges.
- offscreen-webrtc-signaling (application) depends on 0 known edges.
- helix (application) depends on 0 known edges.
- helix-campaign (application) depends on 0 known edges.
- helix-cli (application) depends on 0 known edges.
requirements-dev.txtsrc/helix_api.pysrc/helix_cuda_fields.pysrc/helix_engine/__init__.pypyproject.tomlsrc/helix_engine/CMakeLists.txtdeliver_workbench/tests/__init__.pydeliver_workbench/tests/test_adapter_e2e.pydeliver_workbench/tests/test_database.pydeliver_workbench/tests/test_matchmaker.pybenchmarks/README.mddeliver_workbench/README.mddeploy/helm/helix-teams/README.mddeploy/k8s/README.mdengine/src/helix/cuda/fields/composite_editability.cuengine/src/helix/cuda/fields/dcas9_occupancy.cuengine/src/helix/cuda/fields/gc_homopolymer.cuengine/src/helix/cuda/fields/indel_risk.cutools/hubverifier-go/cmd/hubverify/main.gotools/hubverifier-go/go.modtools/hubverifier-go/internal/c14n/c14n_test.gotools/hubverifier-go/internal/c14n/c14n.gosrc/helix_engine/src/binding.cppsrc/helix_engine/src/ctmc_tau_leap_cuda.cusrc/helix_engine/src/l0_thermo.cusrc/helix_engine/src/physics_cuda.cuexamples/offscreen_webrtc_demo/signaling/package.jsonexamples/offscreen_webrtc_demo/signaling/server.js
requirements-dev.txtsrc/helix_api.pysrc/helix_cuda_fields.pypyproject.tomlsrc/helix_engine/__init__.pydeliver_workbench/tests/__init__.pydeliver_workbench/tests/test_adapter_e2e.py:16deliver_workbench/tests/test_database.py:25benchmarks/README.mddeliver_workbench/README.mddeploy/helm/helix-teams/README.mdengine/src/helix/cuda/fields/composite_editability.cuengine/src/helix/cuda/fields/dcas9_occupancy.cuengine/src/helix/cuda/fields/gc_homopolymer.cutools/hubverifier-go/cmd/hubverify/main.go:22tools/hubverifier-go/go.modtools/hubverifier-go/internal/c14n/c14n_test.go:5src/helix_engine/src/binding.cppsrc/helix_engine/src/ctmc_tau_leap_cuda.cusrc/helix_engine/src/l0_thermo.cuexamples/offscreen_webrtc_demo/signaling/package.jsonexamples/offscreen_webrtc_demo/signaling/server.js:6
Subsystem Clusters
Diagram link: Subsystem Clusters.
- external: external groups 118 components under external/ or related paths. Strategy: path. Internal edges: 0. External edges: 0. Dominant paths:
examples/offscreen_webrtc_demo/signaling/package.json. Rationale: Grouped around dominant path prefixexternal. - root: root groups 9 components under root/ or related paths. Strategy: path. Internal edges: 63. External edges: 15. Dominant paths:
benchmarks/README.md,deliver_workbench/README.md,deploy/helm/helix-teams/README.md,pyproject.toml,src/helix_api.py,src/helix_cuda_fields.py. Rationale: Grouped around dominant path prefixroot. Most connected tosrc,toolsthrough inferred graph edges. - src: src groups 4 components using path structure plus graph-connected merges. Strategy: hybrid. Internal edges: 19133. External edges: 4115. Dominant paths:
examples/offscreen_webrtc_demo/signaling/package.json,examples/offscreen_webrtc_demo/signaling/server.js,src/helix_api.py,src/helix_cuda_fields.py,src/helix_engine/__init__.py,src/helix_engine/src/binding.cpp. Rationale: Grouped around dominant path prefixsrc. Mergedexamples,testsintosrcbecause they attach most strongly through inferred dependency and call edges. Most connected toroot,external,toolsthrough inferred graph edges. - tools: tools groups 2 components under tools/ or related paths. Strategy: path. Internal edges: 46. External edges: 1. Dominant paths:
tools/hubverifier-go/cmd/hubverify/main.go,tools/hubverifier-go/go.mod,tools/hubverifier-go/internal/c14n/c14n_test.go. Rationale: Grouped around dominant path prefixtools. Most connected tosrcthrough inferred graph edges. - engine: engine groups 1 components under engine/ or related paths. Strategy: path. Internal edges: 0. External edges: 0. Dominant paths:
engine/src/helix/cuda/fields/composite_editability.cu,engine/src/helix/cuda/fields/dcas9_occupancy.cu,engine/src/helix/cuda/fields/gc_homopolymer.cu. Rationale: Grouped around dominant path prefixengine.
examples/offscreen_webrtc_demo/signaling/package.jsonbenchmarks/README.mddeliver_workbench/README.mddeploy/helm/helix-teams/README.mdpyproject.tomlsrc/helix_api.pysrc/helix_cuda_fields.pyexamples/offscreen_webrtc_demo/signaling/server.jssrc/helix_engine/__init__.pysrc/helix_engine/src/binding.cpptools/hubverifier-go/cmd/hubverify/main.gotools/hubverifier-go/go.modtools/hubverifier-go/internal/c14n/c14n_test.goengine/src/helix/cuda/fields/composite_editability.cuengine/src/helix/cuda/fields/dcas9_occupancy.cuengine/src/helix/cuda/fields/gc_homopolymer.cu
examples/offscreen_webrtc_demo/signaling/package.jsonbenchmarks/README.mddeliver_workbench/README.mddeploy/helm/helix-teams/README.mdpyproject.tomlsrc/helix_api.pysrc/helix_cuda_fields.pyexamples/offscreen_webrtc_demo/signaling/server.js:6src/helix_engine/__init__.pysrc/helix_engine/src/binding.cpptools/hubverifier-go/cmd/hubverify/main.go:22tools/hubverifier-go/go.modtools/hubverifier-go/internal/c14n/c14n_test.go:5engine/src/helix/cuda/fields/composite_editability.cuengine/src/helix/cuda/fields/dcas9_occupancy.cuengine/src/helix/cuda/fields/gc_homopolymer.cu
Graph Hotspots
Diagram links: Dependency Graph and Component Overview.
- src (module) at
src: score 93609. Inbound 16933, outbound 14267, calls 29026, dependencies 2174. Inbound edges: 16933. Outbound edges: 14267. Call edges: 29026; dependency edges: 2174. Bridges 3 subsystem boundaries:external,root,tools. - Tests (tests) at
tests: score 33528. Inbound 2197, outbound 8976, calls 9611, dependencies 1562. Inbound edges: 2197. Outbound edges: 8976. Call edges: 9611; dependency edges: 1562. Bridges 3 subsystem boundaries:external,root,tools. - helix-governance (application) at
.: score 9432. Inbound 3143, outbound 0, calls 0, dependencies 3143. Inbound edges: 3143. Outbound edges: 0. Call edges: 0; dependency edges: 3143. Bridges 1 subsystem boundaries:src. - Documentation (docs) at
.: score 1713. Inbound 491, outbound 78, calls 569, dependencies 0. Inbound edges: 491. Outbound edges: 78. Call edges: 569; dependency edges: 0. Bridges 2 subsystem boundaries:src,tools. - pytest (package) at
external/python/pytest: score 831. Inbound 276, outbound 0, calls 0, dependencies 276. Inbound edges: 276. Outbound edges: 0. Call edges: 0; dependency edges: 276. Bridges 1 subsystem boundaries:src. - numpy (package) at
external/python/numpy: score 354. Inbound 117, outbound 0, calls 0, dependencies 117. Inbound edges: 117. Outbound edges: 0. Call edges: 0; dependency edges: 117. Bridges 1 subsystem boundaries:src. - github.com/omniscoder/Helix/tools/hubverifier-go (application) at
tools/hubverifier-go: score 270. Inbound 44, outbound 45, calls 86, dependencies 3. Inbound edges: 44. Outbound edges: 45. Call edges: 86; dependency edges: 3. Bridges 1 subsystem boundaries:src. - moderngl (package) at
external/python/moderngl: score 78. Inbound 25, outbound 0, calls 0, dependencies 25. Inbound edges: 25. Outbound edges: 0. Call edges: 0; dependency edges: 25. Bridges 1 subsystem boundaries:src.
src/helix_api.pysrc/helix_cuda_fields.pysrc/helix_engine/__init__.pydeliver_workbench/tests/__init__.pydeliver_workbench/tests/test_adapter_e2e.pydeliver_workbench/tests/test_database.pypyproject.tomlbenchmarks/README.mddeliver_workbench/README.mddeploy/helm/helix-teams/README.mdtools/hubverifier-go/cmd/hubverify/main.gotools/hubverifier-go/go.modtools/hubverifier-go/internal/c14n/c14n_test.go
src/helix_api.pysrc/helix_cuda_fields.pydeliver_workbench/tests/__init__.pydeliver_workbench/tests/test_adapter_e2e.py:16pyproject.tomlbenchmarks/README.mddeliver_workbench/README.mdtools/hubverifier-go/cmd/hubverify/main.go:22tools/hubverifier-go/go.mod
Where to Read Next
- Start with
components.mdfor ownership boundaries. - Use
workflows.mdfor build and test commands. - Use
dependencies.mdto inspect inferred relationships.
Citations
<details> <summary>Citations:</summary>deploy/aws_t4/main.tfdeploy/aws_t4/user_data.shdeploy/docker-compose.image.ymldeploy/docker-compose.ymldeploy/Dockerfile.teamsdeploy/helm/helix-teams/Chart.yamldeploy/helm/helix-teams/README.mddeploy/helm/helix-teams/templates/_helpers.tpldocs/notebooks/edit_dag_visual_demo.ipynbnotebooks/triage_dashboard.ipynbexamples/offscreen_webrtc_demo/signaling/package.jsonpyproject.tomlrequirements-dev.txttools/hubverifier-go/cmd/hubverify/main.go:22tools/hubverifier-go/internal/c14n/c14n_test.go:5tools/hubverifier-go/internal/c14n/c14n.go:118tools/hubverifier-go/internal/hubverify/hubverify.go:859helixhelix-campaignhelix-clihelix-pilot-verifyhelix-studioomnis-helixexamples/offscreen_webrtc_demo/signaling/server.js:6src/helix_api.pydeliver_workbench/api/main.py:213deliver_workbench/cli/main.py:28src/helix/gui/main.py:17.playwright-mcp/console-2026-04-23T04-05-18-509Z.log.playwright-mcp/console-2026-04-23T17-28-08-921Z.log.playwright-mcp/console-2026-04-28T17-46-12-444Z.log.playwright-mcp/console-2026-04-28T17-50-01-212Z.log.playwright-mcp/console-2026-04-28T17-51-40-434Z.logbenchmarks/README.mddeliver_workbench/README.mddeploy/k8s/README.mddeploy/README.mddeploy/vastai/README.mddesign_partner/README.mddesign_partner/sessions/README.mddocs/adr/0001-gui-monolith-refactor.mddocs/artifacts.mddocs/assets/viz/alignment-ribbon.jsondocs/assets/viz/alignment-ribbon.viz.jsondocs/assets/viz/crispr_playground_dag.jsondocs/assets/viz/distance-heatmap.jsondocs/assets/viz/distance-heatmap.viz.jsondocs/assets/viz/minimizers.jsondocs/assets/viz/minimizers.viz.jsondocs/assets/viz/motif-logo.jsondocs/assets/viz/motif-logo.viz.jsondocs/assets/viz/pcr_amplicon_dag.jsondocs/assets/viz/prime_playground_dag.jsondocs/assets/viz/rna-dotplot.jsondocs/assets/viz/rna-dotplot.viz.jsondocs/assets/viz/seed-chain.jsondocs/assets/viz/seed-chain.viz.jsondocs/audit_walkthrough.mddocs/battlecards/benchling.mddocs/benchmarks.mddocs/billion_dollar_thesis.mddocs/ci/verify_gate_template.mddocs/ci/verify_reason_codes.mddocs/cli_config_schema.mddocs/cli_headless.mddocs/cli.mddocs/cli/alpha.mddocs/cli/demo.mddocs/cli/live.mddocs/cli/pcr.mddocs/cli/schema.mddocs/cli/session_contract_v1.mddocs/cli/session_contract_v2.mddocs/cli/session_contract_v3.mddocs/cli/viz.mddocs/cli/workflows.mddocs/competitive_landscape.mddocs/concepts/artifacts.mddocs/concepts/multiscale.mddocs/concepts/outcome_digital_twin.mddocs/concepts/perfection.mddocs/concepts/schemas.mddocs/concepts/workflows.mddocs/contracts/enzyme_program_contract_v1.mddocs/contracts/helix_1_0.mddocs/contracts/lightcone_visual_contract_v0_8.mddocs/contributing.mddocs/crispr_ctmc_tau_leap.mddocs/CROSS_HOST_PROTOCOL.mddocs/decision_cockpit_demo.mddocs/decision_support/spec_v0.mddocs/design_partner_email_template.mddocs/design_partner_program.mddocs/dev_gpu_profiling.mddocs/dev/ci_policy.mddocs/dev/evs.mddocs/dev/offtarget_heat.mddocs/dev/packaging_pyinstaller.mddocs/dev/renderer_fields.mddocs/dev/SECURITY_HARDENING.mddocs/dev/SECURITY_SCANNING.mddocs/dev/ui.mddocs/download.mddocs/edit_dag_frames.mddocs/edit_dag_overview.mddocs/edit-dag-viz.mddocs/engine_architecture.mddocs/engine_cuda_plan.mddocs/enterprise_proof/auroc_delta_demo.mddocs/enterprise_proof/azimuth_public.mddocs/enterprise_proof/evaluation_guide.mddocs/enterprise_proof/government-ready-product-surface.mddocs/enterprise_proof/index.mddocs/enterprise_proof/offtarget_public.mddocs/enterprise_proof/roi.mddocs/enterprise_proof/support_policy.mddocs/enterprise_proof/teams_deploy_guide.mddocs/evs_visual_tests.mddocs/evs_visual.mddocs/faq_v0_1.mddocs/features_catalog.mddocs/genome_editing_evidence_runtime_v0_1.mddocs/getting-started.mddocs/governance_contract.mddocs/governed_predictor_adapters.mddocs/helix_experiment_roadmap.mddocs/helix_principles.mddocs/helixspec_mvp.mddocs/helixspec_quickstart.mddocs/hub/end_to_end_v0.mddocs/hub/example_bundle.mddocs/hub/index.mddocs/hub/investor_memo.mddocs/hub/pilot.mddocs/hub/pitch.mddocs/hub/proof_url_v0.mddocs/hub/review_v0.mddocs/hub/rfcs/index.mddocs/hub/rfcs/rfc_0001_bundle_spec_v1.mddocs/hub/rfcs/rfc_0002_canonical_json_v1.mddocs/hub/rfcs/rfc_0003_run_receipt_v1.mddocs/hub/rfcs/rfc_0004_approval_surface_v1.mddocs/hub/rfcs/rfc_0005_approval_receipt_v1.mddocs/hub/rfcs/rfc_0006_audit_export_v1.mddocs/hub/rfcs/rfc_0007_job_v1.mddocs/hub/rfcs/rfc_0008_backend_fingerprint_v1.mddocs/hub/rfcs/rfc_0009_decision_v1.mddocs/hub/trust_model.mddocs/index.mddocs/instructions.mddocs/lightcone_v0_9_milestone.mddocs/model_limitations/crispr_edit_dag_limitations.mddocs/never_do.mddocs/non_goals.mddocs/ogn_integration.mddocs/omnis_helix_screenshots.mddocs/omnis_helix_strategy.mddocs/omnis_helix_tour.mddocs/paper_deterministic_genome_editing.mddocs/partner_intake.mddocs/partner_ops_playbook.mddocs/playground/index.htmldocs/playground/js/realtime_branch_chart.js:1docs/playground/js/realtime_compare.js:42docs/playground/js/realtime_worker.js:100docs/playground/js/realtime.js:607docs/playground/realtime.html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